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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LIHC rs2219728 chr4:88794949 G/C 7.18E-11 191 0.67 8.37 14.27 KM Plot
LIHC rs2236968 chr3:50465975 A/G 0.000434 192 13.72 13.45 5.88 KM Plot
LIHC rs2238152 chr12:112214459 G/T 0.00036 191 12.1 14.9 5.17 KM Plot
LIHC rs2241315 chr3:10314339 C/T 1.84E-5 191 13.9 13.35 0.2 KM Plot
LIHC rs2241433 chr2:86364653 A/G 7.35E-6 190 13.87 0.2 10.98 KM Plot
LIHC rs226492 chr22:45714489 T/C 6.38E-6 182 0.67 13.87 13.35 KM Plot
LIHC rs2269801 chr12:112326123 T/C 2.24E-5 191 12.57 14.85 5.17 KM Plot
LIHC rs2269802 chr12:112326138 A/G 2.24E-5 191 12.57 14.85 5.17 KM Plot
LIHC rs2270456 chr3:10311292 A/G 2.25E-5 188 13.6 13.35 0.2 KM Plot
LIHC rs2270459 chr16:89979851 A/C 1.63E-6 192 2.2 11.13 14.1 KM Plot
LIHC rs2272390 chr2:202195311 G/A 0 189 13.53 13.03 0.37 KM Plot
LIHC rs2278105 chr2:86466516 A/G 0.000442 192 17.33 10.5 17.08 KM Plot
LIHC rs2282758 chr3:50477905 C/T 0.000486 191 13.72 13.17 5.88 KM Plot
LIHC rs2283354 chr12:112206685 G/A 0.00036 191 12.1 14.9 5.17 KM Plot
LIHC rs2288341 chr15:44819581 A/G 5.36E-6 192 1.03 11.97 13.6 KM Plot